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Abbreviations A: Adult An: Antenna BPKM: Bases per kilobase per million mapped bases CDS: Coding sequence E: Embryo F: Fat body FDR: False discovery rate FPKM: Fragments per kilobase per million mapped reads G: Midgut GO: Gene ontology H: Head L: Larval M: Muscle MCOT: A gene set generated by integrating the best models from the programs M AKER2, C ufflinks, O ases and T rinity MT: Malpighian tubule NGS: Next-generation sequencing O: Ovary OGS: Official gene set P: Pupal T: Testis W: Wandering W: Whole body References Reinecke JP, Buckner J, Grugel S

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